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View Structure Prediction Details

Protein: FLS2_ARATH
Organism: Arabidopsis thaliana
Length: 1173 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for FLS2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLSKTFLI LTLTFFFFGI ALAKQSFEPE IEALKSFKNG ISNDPLGVLS DWTIIGSLRH  60
   61 CNWTGITCDS TGHVVSVSLL EKQLEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.09691
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [87-746]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLSPAIANLT YLQVLDLTSN SFTGKIPAEI GKLTELNQLI LYLNYFSGSI PSGIWELKNI  60
   61 FYLDLRNNLL SGDVPEEICK TSSLVLIGFD YNNLTGKIPE CLGDLVHLQM FVAAGNHLTG 120
  121 SIPVSIGTLA NLTDLDLSGN QLTGKIPRDF GNLLNLQSLV LTENLLEGDI PAEIGNCSSL 180
  181 VQLELYDNQL TGKIPAELGN LVQLQALRIY KNKLTSSIPS SLFRLTQLTH LGLSENHLVG 240
  241 PISEEIGFLE SLEVLTLHSN NFTGEFPQSI TNLRNLTVLT VGFNNISGEL PADLGLLTNL 300
  301 RNLSAHDNLL TGPIPSSISN CTGLKLLDLS HNQMTGEIPR GFGRMNLTFI SIGRNHFTGE 360
  361 IPDDIFNCSN LETLSVADNN LTGTLKPLIG KLQKLRILQV SYNSLTGPIP REIGNLKDLN 420
  421 ILYLHSNGFT GRIPREMSNL TLLQGLRMYS NDLEGPIPEE MFDMKLLSVL DLSNNKFSGQ 480
  481 IPALFSKLES LTYLSLQGNK FNGSIPASLK SLSLLNTFDI SDNLLTGTIP GELLASLKNM 540
  541 QLYLNFSNNL LTGTIPKELG KLEMVQEIDL SNNLFSGSIP RSLQACKNVF TLDFSQNNLS 600
  601 GHIPDEVFQG MDMIISLNLS RNSFSGEIPQ SFGNMTHLVS LDLSSNNLTG EIPESLANLS 660
  661 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.69897
Match: 2a0zA
Description: The molecular structure of toll-like receptor 3 ligand binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [747-858]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLKHLKLASN NLKGHVPESG VFKNINASDL MGNTDLCGSK KPLKPCTIKQ KSSHFSKRTR  60
   61 VILIILGSAA ALLLVLLLVL ILTCCKKKEK KIENSSESSL PDLDSALKLK RF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [859-1173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPKELEQATD SFNSANIIGS SSLSTVYKGQ LEDGTVIAVK VLNLKEFSAE SDKWFYTEAK  60
   61 TLSQLKHRNL VKILGFAWES GKTKALVLPF MENGNLEDTI HGSAAPIGSL LEKIDLCVHI 120
  121 ASGIDYLHSG YGFPIVHCDL KPANILLDSD RVAHVSDFGT ARILGFREDG STTASTSAFE 180
  181 GTIGYLAPEF AYMRKVTTKA DVFSFGIIMM ELMTKQRPTS LNDEDSQDMT LRQLVEKSIG 240
  241 NGRKGMVRVL DMELGDSIVS LKQEEAIEDF LKLCLFCTSS RPEDRPDMNE ILTHLMKLRG 300
  301 KANSFREDRN EDREV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.69897
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle