YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FHA2_ARATH
Organism: Arabidopsis thaliana
Length: 320 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FHA2_ARATH.

Description E-value Query
Range
Subject
Range
gi|26451714 - gi|26451714|dbj|BAC42952.1| unknown protein [Arabidopsis thaliana]
327.0 [0..1] [320..1]

Back

Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAVGGGSD VEVGFAKLQG EDFEYYMQSY SIILGRNSKK ATVDVDLSSL GGGMNISRNH  60
   61 ARIFYDFTRR RFSLEVLGKN GCLVEGVLHL PGNPNVKLDS QDLLQIGDKE FYFLLPVRSI 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.69897
Match: 2fezA
Description: Mycobacterium tuberculosis EmbR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.962970280214435 bayes_pls_golite062009
protein binding 0.56456434217804 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [122-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGPLGPRHHV SGQTSVVPYH NYQSGPGSGS GKKGVRSREL YEYDDEDDDD DDDEEDDMRG  60
   61 SGKKTRRDGH EVVYASGEKK REGRSKVDRE ADDQQFLQLE EKDVVSSVAT VLSDLCGPGE 120
  121 WMPMEKLHSV ILKEYGNVWH HSRVRRYLSQ EDWAIPEAKG KPWYGLLMLL RKYPEHFVIN 180
  181 TRSKGRVTLE FVSLVTLLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle