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View Structure Prediction Details

Protein: gi|15242954, gi|...
Organism: Arabidopsis thaliana
Length: 1046 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15242954, gi|....

Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSSRS RTWRYRVFTN FHGPDVRKTF LSHLRKQFSY NGISMFNDQS IERSQTIVPA  60
   61 LTGAIKESRI SIVVLSKNYA SSRWCLDELL EILKCREDIG QIVMTVFYGV DPSDVRKQTG 120
  121 EFGIAFNKTC EGKTNEETQK WSKALNDVGN IAGEHFFNW

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 54.259637
Match: PF01582.12
Description: No description for PF01582.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [160-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNEAKMIEKI ARDVSNKLNA TISWDFEDMV GIEAHLQKMQ SLLHLDYEDG AMIVGIYGPA  60
   61 GIGKTTIARA LHSRLSSSFQ LTCFMENIRG SYNSGLDEYG LKLRLQEQLL SKVLNHDGIR 120
  121 INHLGAIPER LCDQKVLIIL DDVDDLQQLE ALANETNWFG PGSRIIVTTE DQELLEQHDV 180
  181 NKKYHVDFPT REEACKIFCT YAFRRSFAPY GFEKLAERVT WLCSNLPLGL RVMGSTLRGK 240
  241 KEDDWEGILR RLENSLDRKI DGVLRVGYDH LCEDDQFLYL LIAFFFNYVD DDHVKAMLVE 300
  301 DNLDVKLGLK TLAYKSLIQI SA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [482-1046]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGNIVMHKLL QRVGREAIQR QEPTKRRILI DAREICDVLR YGKGTSNVSG ISFDTSDMSE  60
   61 VTISDDAFKR LHDLRFLKVT KSRYDGKYRM HIPAGIEFPC LLRLLHWEAY PSKCLPPTFN 120
  121 PEFLVELNMQ GSQLEHLWSG TQSLRNLKNM DLGWSPNLKE LPDLTNATNL EDLNLNSCES 180
  181 LVEIPSSFSH LHKLKNLWMS YCINLQVIPA HMNLVSLERV TMTGCSRFRK IPVISTHINY 240
  241 LDIAHNTEFE VVHASIALWC RLHYLNMSYN ENFMGLTHLP MSLTQLILRY SDIERIPDCI 300
  301 KALHQLFSLD LTGCRRLASL PELPGSLLDL EAEDCESLET VFSPLHTPRA LLNFTNCFKL 360
  361 GGQARRAIIR RRSEIIGKAL LPGREVPAEF DHRAKGNSLT IILNGYRPSY DFIQYLVCVV 420
  421 ISPNQEITKI SDSSTLLCHT NGYIFPSYEE VYIGAVSKCR KEHLFIFRSG YYLNVDPSGA 480
  481 SREIVFEFSS KSQDFDIIEC GVKIWTAQSI ERGYLVFEDD NEIKHDDHTN RVRGHYKASN 540
  541 VDYKSVSRKR PRKTDLKLEI PRRRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.154902
Match: 3cigA
Description: No description for 3cigA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle