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View Structure Prediction Details

Protein: SUC5_ARATH
Organism: Arabidopsis thaliana
Length: 512 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUC5_ARATH.

Description E-value Query
Range
Subject
Range
gi|12057172 - gi|12057172|emb|CAC19851.1| sucrose trasporter [Arabidopsis thaliana]
235.0 [0..1] [509..1]

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Predicted Domain #1
Region A:
Residues: [1-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGALEAERAA NNATALETQS SPEDLGQPSP LRKIISVASI AAGVQFGWAL QLSLLTPYIQ  60
   61 LLGIPHKWSS YMWLCGPISG MIVQPIVGYH SDRCESRFGR RRPFIAAGVA LVAVSVFLIG 120
  121 FAADMGHSFG DKLENKVRTR AIIIFLTGFW FLDVANNTLQ GPCRAFLADL AAGDAKKTRV 180
  181 ANACFSFFMA VGNVLGYAAG SYTNLHKMFP FTMTKACDIY CANLKTCFFL SITLLLIVTF 240
  241 SSLWYVKDKQ WSPPQGDKEE KTSSLFFFGE IFGAVRHMKR PMVMLLIVTV INWIAWFPFI 300
  301 LYDTDWMGRE VYGGNSDGDE RSKKLYDQGV QAGALGLMFN SILLGFVSLG VESIGRKMGG 360
  361 AKRLWGCVNF ILAIGLAMTV LVTKSAEHHR EIAGPLAGPS SGIKAGVFSL FTVLGIPLAI 420
  421 TYSIPFALAS IFSTNSGAGQ GLSLGVLNIA ICIPQMIVSF SSGPLDAQFG GGNLPSFVVG 480
  481 AIAAAVSGVL ALTVLPSPPP DAPAMSGAMG FH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.154902
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle