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View Structure Prediction Details

Protein: gi|88900314, gi|...
Organism: Arabidopsis thaliana
Length: 92 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88900314, gi|....

Description E-value Query
Range
Subject
Range
gi|44681398, gi|... - gi|44681398|gb|AAS47639.1| At3g03850 [Arabidopsis thaliana], gi|38603906|gb|AAR24698.1| At3g03850 [A...
138.0 [0..1] [92..1]
gi|7442216, gi|3... - pir||T07798 auxin-induced protein SAUR - radish (fragment), gi|3043536|dbj|BAA25434.1| SAUR [Raphan...
130.0 [0..1] [91..1]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLRSFFAT KHIIRRSFTT ESLSTPKGFF AVYVGENLKK KRYLVPVCYL NKPSFQALLR  60
   61 KAEEEFGFNH PTGGLSLPCD EAFFFTVTSQ IR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.657577
Match: PF02519.5
Description: No description for PF02519.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.576 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.565 N/A N/A d.218.1 Nucleotidyltransferase
View Download 0.536 N/A N/A d.58.49 YajQ-like
View Download 0.536 N/A N/A d.58.49 YajQ-like
View Download 0.521 N/A N/A d.58.42 N-utilization substance G protein NusG, N-terminal domain
View Download 0.521 N/A N/A d.58.42 N-utilization substance G protein NusG, N-terminal domain
View Download 0.516 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.496 N/A N/A d.218.1 Nucleotidyltransferase
View Download 0.461 N/A N/A g.7.1 Snake toxin-like
View Download 0.457 N/A N/A d.14.1 Ribosomal protein S5 domain 2-like
View Download 0.381 N/A N/A c.52.2 tRNA splicing endonuclease, C-terminal domain
View Download 0.348 N/A N/A d.58.4 Dimeric alpha+beta barrel
View Download 0.340 N/A N/A c.52.2 tRNA splicing endonuclease, C-terminal domain
View Download 0.300 N/A N/A d.49.1 Signal recognition particle alu RNA binding heterodimer, SRP9/14
View Download 0.270 N/A N/A d.52.6 BolA-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle