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View Structure Prediction Details

Protein: CIPK5_ARATH
Organism: Arabidopsis thaliana
Length: 445 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIPK5_ARATH.

Description E-value Query
Range
Subject
Range
gi|24899813 - gi|24899813|gb|AAN65121.1| serine/threonine protein kinase-like protein [Arabidopsis thaliana]
399.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERRVLFG KYEMGRLLGK GTFAKVYYGK EIIGGECVAI KVINKDQVMK RPGMMEQIKR  60
   61 EISIMKLVRH PNIVELKEVM ATKTKIFFVM EFVKGGELFC KISKGKLHED AARRYFQQLI 120
  121 SAVDYCHSRG VSHRDLKPEN LLLDENGDLK ISDFGLSALP EQILQDGLLH TQCGTPAYVA 180
  181 PEVLKKKGYD GAKADIWSCG VVLYVLLAGC LPFQDENLMN MYRKIFRADF EFPPWFSPEA 240
  241 RRLISKLLVV DPDRRISIPA IMRTPWLRKN FTPPLAFKID EPICSQSSKN NEEEEEDGDC 300
  301 ENQTEPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.69897
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [308-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPKFFNAFEF ISSMSSGFDL SSLFESKRKV QSVFTSRSSA TEVMEKIETV TKEMNMKVKR  60
   61 TKDFKVKMEG KTEGRKGRLS MTAEVFEVAP EISVVEFCKS AGDTLEYDRL YEEEVRPALN 120
  121 DIVWSWHGDN NNTSSEDC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 2ehbD
Description: No description for 2ehbD was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle