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View Structure Prediction Details

Protein: PLRX3_ARATH
Organism: Arabidopsis thaliana
Length: 727 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLRX3_ARATH.

Description E-value Query
Range
Subject
Range
gi|3894387 - gi|3894387|gb|AAC78593.1| Hcr2-0B [Lycopersicon esculentum]
368.0 [0..1] [491..94]

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Predicted Domain #1
Region A:
Residues: [1-41]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHIYKQPLG IFQGFVPTLT DAEVSFIAQR QLLTLPENGE L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.221849
Match: 2z63A
Description: No description for 2z63A was found.

Predicted Domain #2
Region A:
Residues: [42-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDDIEYEVDL KVTFANHRLK RAYIALQAWK KAVYSDPFNT TGNWHGPHVC GYTGVFCAPA  60
   61 LDDPDVAVVA GVDLNGADIA GHLPAELGLM TDVAMFHLNS NRFCGIIPKS FEKLSLMHEF 120
  121 DVSNNRFVGP FPSVVLSWPA VKFIDVRYND FEGQVPPELF KKDLDAIFLN NNRFTSTIPD 180
  181 SLGESSASVV TFAHNKFSGC IPRSIGNMKN LNEIIFKDNS LGGCFPSEIG KLANVNVFDA 240
  241 SMNSFTGVLP PSFVGLTSME EFDISGNKLT GFIPENICKL PKLVNLTYAY NYFNGQGDSC 300
  301 VPGSQKQIAL DDTRNCLPDR PKQRSAKECA VVISRPVDCS KDKCAGGSSQ ATPSKSPSPV 360
  361 PTRPVHKPQP PKESPQPNDP YNQSPVKFRR SPPPPQQPHH HVVHSPPPAS SPPTSPPVHS 420
  421 TPSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 2id5A
Description: No description for 2id5A was found.

Predicted Domain #3
Region A:
Residues: [466-570]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHKPQPPKES PQPNDPYDQS PVKFRRSPPP PPVHSPPPPS PIHSPPPPPV YSPPPPPPVY  60
   61 SPPPPPPVYS PPPPPPVHSP PPPVHSPPPP VHSPPPPVHS PPPPV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.982
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [571-727]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSPPPPVHSP PPPVYSPPPP PVHSPPPPVH SPPPPVHSPP PPVYSPPPPP PVHSPPPPVF  60
   61 SPPPPVHSPP PPVYSPPPPV YSPPPPPVKS PPPPPVYSPP LLPPKMSSPP TQTPVNSPPP 120
  121 RTPSQTVEAP PPSEEFIIPP FIGHQYASPP PPMFQGY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.08
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle