YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6728983, gi\|1...
Organism:	Arabidopsis thaliana
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6728983, gi|1....

Description	E-value	Query Range	Subject Range
gi\|27808636, gi\|... - gi\|9759129\|dbj\|BAB09614.1\| unnamed protein product [Arabidopsis thaliana], gi\|27808636\|gb\|AAO24598.1...	141.0	[0..1]	[105..1]
gi\|92889316 - gi\|92889316\|gb\|ABE89815.1\| hypothetical protein MtrDRAFT_AC148171g28v1 [Medicago truncatula]	137.0	[0..1]	[105..1]
gi\|78191418, gi\|... - gi\|78191418\|gb\|ABB29930.1\| unknown [Solanum tuberosum], gi\|76573353\|gb\|ABA46781.1\| unknown [Solanum ...	129.0	[0..1]	[105..1]
gi\|62642082 - gi\|62642082\|gb\|AAX92680.1\| C2H2 type zinc finger family protein [Picea abies]	118.0	[0..1]	[105..1]
gi\|53792616, gi\|... - gi\|53792616\|dbj\|BAD53630.1\| zinc finger protein-like [Oryza sativa Japonica Group], gi\|53792608\|dbj\|...	117.0	[0..1]	[105..1]
gi\|13162211 - gi\|13162211\|emb\|CAC33094.1\| hypothetical protein [Rhodomonas sp. CS24]	115.0	[0..4]	[82..17]
gi\|70799729, gi\|... - gi\|73536868\|ref\|XP_847853.1\| hypothetical protein [Leishmania major strain Friedlin], gi\|70799729\|gb...	91.0	[0..1]	[84..1]
gi\|116058570 - gi\|116058570\|emb\|CAL54277.1\| unnamed protein product [Ostreococcus tauri]	87.0	[0..1]	[86..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGKAKPKKH TAKEIQAKID AALTNRGGGK AGIADRTGKE KGGHAKYECP HCKITAPGLK  60
   61 TMQIHHESKH PNIIYEESKL VNLHAVLAPV AESKPKPGIR GSLKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	1wvkA
Description:	NMR Solution Structure of the Partially Disordered Protein At2g23090 from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits