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View Structure Prediction Details

Protein: BEH4_ARATH
Organism: Arabidopsis thaliana
Length: 325 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BEH4_ARATH.

Description E-value Query
Range
Subject
Range
gi|46228363 - gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ...
gi|66359288 - gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...
221.0 [0..25] [299..1496]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
   61 WIVEPDGTTY RKGCSRPVER MEIGGGSATA SPCSSYQPSP CASYNPSPGS SNFMSPASSS 120
  121 FANLTSGDGQ SLIPWLKHLS TTSSSSASSS SRLPNYLYIP GGSISAPVTP PLSSPTARTP 180
  181 RMNTDWQQLN NSFFVSSTPP SPTR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [205-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QIIPDSEWFS GIQLAQSVPA SPTFSLVSQN PFGFKEEAAS AAGGGGGSRM WTPGQSGTCS  60
   61 PAIPPGADQT ADVPMSEAVA PPEFAFGSNT NGLVKAWEGE RIHEESGSDD LELTLGNSST 120
  121 R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.360 N/A N/A a.74.1 Cyclin-like
View Download 0.269 N/A N/A d.169.1 C-type lectin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle