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View Structure Prediction Details

Protein: gi|8953729, gi|1...
Organism: Arabidopsis thaliana
Length: 118 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8953729, gi|1....

Description E-value Query
Range
Subject
Range
gi|32442810 - gi|32442810|gb|AAN23108.2| putative farnesylated protein [Brassica rapa subsp. pekinensis]
119.0 [0..1] [117..28]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVVVLKLDV HCEKTKQKAM STVCCLSGVN SVEVKDGKLT VTGEIDAYMI VKKLKKICHT  60
   61 EFISVGPVKE PEKKKPDDPK KPETKPPDVI YHYVPPCPPY YHNFNGCYNE DPNACVTS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.0
Match: 1p6tA
Description: Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.246147507070597 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle