YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25412329, gi\|...
Organism:	Arabidopsis thaliana
Length:	655 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25412329, gi|....

Description	E-value	Query Range	Subject Range
gi\|222626184, gi... - gi\|222626184\|gb\|EEE60316.1\| hypothetical protein OsJ_13397 [Oryza sativa Japonica Group], gi\|1154566...	546.0	[0..55]	[654..5]
gi\|115385751, gi... - gi\|115385751\|ref\|XP_001209422.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	507.0	[0..49]	[655..36]
gi\|83775352 - gi\|83775352\|dbj\|BAE65474.1\| unnamed protein product [Aspergillus oryzae] gi\|169784291 - gi\|169784291\|ref\|XP_001826607.1\| hypothetical protein [Aspergillus oryzae RIB40]	479.0	[0..49]	[655..37]
gi\|88180170, gi\|... - gi\|88180170\|gb\|EAQ87638.1\| hypothetical protein CHGG_04257 [Chaetomium globosum CBS 148.51], gi\|1161...	462.0	[0..62]	[650..4]
gi\|38112017, gi\|... - gi\|39969117\|ref\|XP_365949.1\| hypothetical protein MG10169.4 [Magnaporthe grisea 70-15], gb\|EAA57494....	457.0	[0..129]	[649..234]
gi\|42553673, gi\|... - gi\|46136217\|ref\|XP_389800.1\| hypothetical protein FG09624.1 [Gibberella zeae PH-1], gi\|42553673\|gb\|E...	457.0	[0..57]	[653..23]
LACE1_RAT - Lactation elevated protein 1 OS=Rattus norvegicus GN=Lace1 PE=2 SV=1	457.0	[0..163]	[648..66]
gi\|21668096, gi\|... - gi\|21919411\|ref\|NP_665686.1\| lactation elevated 1 [Mus musculus], gi\|21668096\|gb\|AAM74227.1\|AF520417...	455.0	[0..164]	[648..67]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTGPHRVW QIWHPSFDIS TKPTKEIYTD TNKPNQQYDK RSIFHHLNRD RKASLQRRNH  60
   61 NRSLKQQIMP NVSQISTVLR LAFSCKRRLS NGLHFVARS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSTSDPPKQP SGPLTNYSKL VEQGRLQHDP YQEKVVSAFE NLFGRLEHFE KQMEDYHVRL  60
   61 AEWEKKREEE RRKLMVEEAE KKEDDGMWAS VNKQGQKLLG RWVLGRRQMN VEPGVGKWVS 120
  121 YLNRERKLDS IVGSRPAVPP APKGLYIYGN VGCGKTMLMD MFYGATDGII RHRQRFHFHE 180
  181 AMLKINEQMH KYWKENGAEK PMQYSISSWI MNLPVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2qgzA
Description:	No description for 2qgzA was found.

Predicted Domain #3

Region A:
Residues: [316-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKVKEWLAGE EFYKQQLQMK HILPAVADKF LVDQQSSKKG ASILCFDEIQ TVDVFAIVAL  60
   61 SGIMSRLLTT GTVLVATSNR APRELNQDGM QKEIFDKFIS KLEKHCEIIS IGSEVDYRRV 120
  121 AAKNSAENVH YLWP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	2qgzA
Description:	No description for 2qgzA was found.

Predicted Domain #4

Region A:
Residues: [450-655]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNDAVLEEFE KMWRQVTDQY GGEITSATLP VMFGRTVEVP ESCSGVARFT FEYLCGRPVG  60
   61 AADYIAVAKN YHTIFISDIP AMSMEIRDKA RRFITLVDEL YNHHCCLVSS AETAIDELFQ 120
  121 GTAEGTLFDL ESFQFETETE DSRLRRDVLA EGSISAAGSP SSIVSMLSGE EEMFAFARAA 180
  181 SRLIEMQTPL YLEGVRFLHP YFHQQK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits