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View Structure Prediction Details

Protein: gi|21618005, gi|...
Organism: Arabidopsis thaliana
Length: 125 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21618005, gi|....

Description E-value Query
Range
Subject
Range
gi|6984136 - gi|6984136|gb|AAF34768.1|AF227623_1 unknown [Euphorbia esula]
162.0 [0..1] [122..1]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAAAPAVI SWTRSGIVSK SGQTQKKSEM KVSYITGLNS YGGLKAQNNK VVSMGSPLCT  60
   61 EQCFANVVMS LKGRRGNGGA LSTTCNAVGE IFKIAAIMNA LTLVGVAVGF VLLRIETSVE 120
  121 EAEAE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 20.677781
Match: PF08041.2
Description: No description for PF08041.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.762 N/A N/A a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.640 N/A N/A d.141.1 Ribosomal protein L6
View Download 0.534 N/A N/A d.129.1 TATA-box binding protein-like
View Download 0.479 N/A N/A d.141.1 Ribosomal protein L6
View Download 0.477 N/A N/A d.141.1 Ribosomal protein L6


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle