YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: COB22_ARATH
Organism: Arabidopsis thaliana
Length: 926 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for COB22_ARATH.

Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRLEIKRK LAQRSERVKS VDLHPTEPWI LASLYSGTLC IWNYQTQVMA KSFEVTELPV  60
   61 RSAKFVARKQ WVVAGADDMY IRVYNYNTMD KVKVFE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.69897
Match: 1vyhC
Description: PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [97-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHSDYIRCVA VHPTLPYVLS SSDDMLIKLW DWEKGWACTQ IFEGHSHYVM QVTFNPKDTN  60
   61 TFASASLDRT IKIWNLGSPD PNFTLDAHQK GVNCVDYFTG GDKPYLITGS DDHTAKVWDY 120
  121 QTKSCVQTLE GHTHNVSAVC FHPELPIIIT GSEDGTVRIW HATTYRLENT LNYGLERVWA 180
  181 IGYIKSSRRV VIGYDEGTIM VKLGREIPVA SMDNTGKIIW AKHNEIQTAN IKSIGADYEV 240
  241 TDGERLPLSV KELGTCDLYP QSLKHNPNGR FVVVCGDGEY IIYTALAWRN RSFGSGLEFV 300
  301 WSSEGECAVR ESSSKIKIFS KNFQEKRSIR PTFSAEKIF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 3bwsA
Description: No description for 3bwsA was found.

Predicted Domain #3
Region A:
Residues: [436-737]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGTLLAMCSS DFICFYDWAE CRLIQRIDVT VKNLYWADSG DLVAIASDTS FYILKFNRDL  60
   61 VTSHFDSGRP TEEEGVEDAF EVLHENDERV RTGIWVGDCF IYNNSSWKLN YCVGGEVTTM 120
  121 YHLDRPMYLL GYLASQSRVF LVDKEFNVIG YTLLLSLIEY KTLVMRGDLD KASEILPTIP 180
  181 KDQHNSVAHF LESRGMIEDA LEIATDPDYR FELAIQLGRL EIAQEIAVEV QSESKWKQLG 240
  241 ELAMSSGKLQ MAEECMKYAM DLSGLLLLYS SLGDAEGVTK LATLAKEQGK NNVAFLCLFM 300
  301 LG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.045757
Match: 2ojhA
Description: No description for 2ojhA was found.

Predicted Domain #4
Region A:
Residues: [738-926]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLEDCLQLLV ESNRIPEAAL MARSYLPSKV SEIVALWRKD LSKVNSKAAE SLADPEEYSN  60
   61 LFEDWQVALS VEAKAVETRG VYTGAKDYPS HADKSSMTLV EAFRNLQVEE EESLENGDMD 120
  121 HEEVVAEENG NEQRNEDDVA EHVEEHHEEK EAEEEEGIVD GDSTDGAVLV NGSEADEEWG 180
  181 TNNEGNPSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle