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View Structure Prediction Details

Protein: ERF83_ARATH
Organism: Arabidopsis thaliana
Length: 244 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF83_ARATH.

Description E-value Query
Range
Subject
Range
gi|109693570 - gi|109693570|gb|ABG38530.1| C-repeat/DRE binding factor 1 [Cucumis sativus]
gi|215794504 - gi|215794504|gb|ACJ70134.1| CBF1 [Olimarabidopsis pumila]
DRE1B_ARATH - Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2
184.0 [0..6] [193..27]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGRGSSVV GPALPVTAGG SVKEPRYRGV RKRPWGRFAA EIRDPLKKSR VWLGTFDSAV  60
   61 DAARAYDTAA RNLRGPKAKT NFPIDCSPSS PLQPLTYLHN QNLCSPPVIQ NQIDPFMDHR 120
  121 LYGGGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.39794
Match: 2gccA
Description: SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.339357445627225 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [127-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQEQQQQQII SRPASSSMSS TVKSCSGPRP MEAAAASSSV AKPLHAIKRY PRTPPVAPED  60
   61 CHSDCDSSSS VIDDGDDIAS SSSRRKTPFQ FDLNFPPLDG VDLFAGGIDD LHCTDLRL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle