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View Structure Prediction Details

Protein: gi|25345683, gi|...
Organism: Arabidopsis thaliana
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25345683, gi|....

Description E-value Query
Range
Subject
Range
gi|92889836 - gi|92889836|gb|ABE90048.1| Berberine and berberine like, putative [Medicago truncatula]
345.0 [0..21] [524..23]

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Predicted Domain #1
Region A:
Residues: [1-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLLIICML LISVLVATSQ SQTDPETFLR CLVREGSNPQ VFISDVTYIP SNSSFTTVLR  60
   61 RRIPNLRFDK PTTPKPIAII TPTTWSHISP VLACARLFPV QVRIRSGGHD FEGLSYTSTA 120
  121 PFFLIDLLNF KSVDVNLTEG TAWVDTGATL GELYYKIAEK SNVLGFPAGL CTTLGVGGHI 180
  181 SGGGYGTMMR KYGLSVDNVV GSRIIDSNGN TYFDRMSMGE ELFWAVRGGG AASFGIVMGY 240
  241 KIRLVPVPEK VTVFSVGKTV GEGAVDLIMK WQNFSHSTDR NLFVKLTLTL VNGAKPGEKK 300
  301 VLATFIGMNL GGFDKTLNVM NRDFPELKLK KTDCTEMRWI DSVLFWAGYP VGTPTSVLLN 360
  361 PTVTKKLFMK RKSDYVKRPV SRTGLGLILK KLVELEKVEM NWNPYGGRMG EIPSSRTPFP 420
  421 HRGGNLFNIE YIIDWSEAGD NVEKKYLALA NEFYRFMTPY VSSNPREAFL NYRDIDIGSS 480
  481 GNSTYEEGKI YGAKYFKDNF ERLVDIKTKF DEINFWRNEQ SIPVRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.0
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle