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View Structure Prediction Details

Protein: gi|3402675, gi|7...
Organism: Arabidopsis thaliana
Length: 189 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3402675, gi|7....

Description E-value Query
Range
Subject
Range
gi|47208696 - gi|47208696|emb|CAF89993.1| unnamed protein product [Tetraodon nigroviridis]
228.0 [0..2] [181..803]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSDGNCQF RALADQLYQN SDCHELVRQE IVKQNMSLST NSQWGDEVTL RVAADVYQVK  60
   61 IILITSIKLI PFMEFLPKSQ KEPDKVIHMS YLAGIHFNSI YKK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.16
Match: 1tffA
Description: Structure of Otubain-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.465394995609075 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [104-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKEKGSRSSS SSSSAVWMKL QRKKENEAKK KEEEEKERKD MEKEEKKKDK EDKKKDKEDK  60
   61 KKAKVQKEKK EKKEKKNRNH HFHYSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle