| Protein: | BBD1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 325 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BBD1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
429.0 | [0..1] | [325..1] |
|
|
370.0 | [0..3] | [320..2] |
|
|
337.0 | [0..1] | [320..1] |
|
|
286.0 | [0..3] | [237..2] |
|
|
252.0 | [0..85] | [320..94] |
|
|
237.0 | [0..115] | [319..1] |
|
|
231.0 | [0..115] | [319..1] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MRSVQAPVVC PAIRPRQVGA CASLVNYTGL KPRSQFWGNR TKGVKSQGTT TTITLRLCNK 60
61 SIKCVFSSHS DGNGSTAENF NENDEEYVNS SVVEAVEVKS GADGFMVKMR DGRQLR
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.513 | d.129.3 | Bet v1-like |
| View | Download | 0.469 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.375 | d.58.19 | Bacterial exopeptidase dimerisation domain |
| View | Download | 0.371 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.364 | a.118.1 | ARM repeat |
| View | Download | 0.317 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.287 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.235 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.235 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.206 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.203 | d.129.2 | Phosphoglucomutase, C-terminal domain |
|
Region A: Residues: [117-266] |
1 11 21 31 41 51
| | | | | |
1 CVHNNPQGGH LPDYAPHPAI VLKMEDGTGL LLPIIVLEMP SVLLMAAMTN VQIARPTMYQ 60
61 VVKEMVDKMG YEVRLVRVTK RVHEAYFAQL FLSKVGNASE CVSFDLRPSD AINIAVRCKI 120
121 PIQVNKYLAY SDGMRVIESG KISTPAPASD
|
| Detection Method: | |
| Confidence: | 35.69897 |
| Match: | 1sj5A |
| Description: | CRYSTAL STRUCTURE OF C38A MUTANT OF HYPOTHETICAL PROTEIN (TM0160) FROM THERMOTOGA MARITIMA AT 2.8 A RESOLUTION |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [267-325] |
1 11 21 31 41 51
| | | | | |
1 GLLFTEQDRP NGQACLDTKE FNILSKMMQA VDEERYDEAA EWRDKLGQFR AKRNLRKYT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.740 | N/A | N/A | a.8.9 | Description not found. |
| View | Download | 0.713 | N/A | N/A | a.7.17 | Description not found. |
| View | Download | 0.635 | N/A | N/A | a.8.11 | Description not found. |
| View | Download | 0.632 | N/A | N/A | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.632 | N/A | N/A | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.620 | N/A | N/A | a.8.11 | Description not found. |
| View | Download | 0.596 | N/A | N/A | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.527 | N/A | N/A | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.506 | N/A | N/A | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.253 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
