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View Structure Prediction Details

Protein: PS10A_ARATH
Organism: Arabidopsis thaliana
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PS10A_ARATH.

Description E-value Query
Range
Subject
Range
gi|88950711, gi|... - gi|88950711|ref|ZP_01153285.1| AAA ATPase, CDC48 [Methanosaeta thermophila PT], gi|88929910|gb|EAR48...
341.0 [0..1] [394..338]

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Predicted Domain #1
Region A:
Residues: [1-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVDESVRR RTAAVSEYRK KLLQHKELES RVRTARENLR GAKKEFNKTE DDLKSLQSVG  60
   61 QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS GTRVVLDMTT LTIMRALPRE 120
  121 VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG 180
  181 PPGTGKTLLA RAIASNIDAN FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE 240
  241 IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR 300
  301 LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIDYEAIVKL AEGFNGADLR NICTEAGMFA 360
  361 IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.69897
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle