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View Structure Prediction Details

Protein: NAT1_ARATH
Organism: Arabidopsis thaliana
Length: 520 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAT1_ARATH.

Description E-value Query
Range
Subject
Range
NAT6_ARATH - Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2
309.0 [0..5] [518..16]
gi|62183958 - gi|62183958|gb|AAX73299.1| putative permease I [Lycopersicon esculentum]
308.0 [0..5] [518..20]
gi|89330191 - gi|89330191|emb|CAJ84113.1| root uracil permease 1 [Oryza sativa (japonica cultivar-group)]
305.0 [0..4] [518..21]
gi|49333379 - gi|49333379|gb|AAT64019.1| putative permease [Gossypium hirsutum]
298.0 [0..3] [520..8]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEISHPPME QLQDLEYCID SNPPWPETVL LAFQNYILML GTSAFIPALL VPAMGGSDGD  60
   61 RARVIQTLLF VAGIKTLLQA LFGTRLPAVV GGSLAYVVPI AYIINDSSLQ KISNDHERFI 120
  121 HTMRAIQGAL IVASSIQIIL GYSQVWGLFS RFFSPLGMAP VVGLVGLGMF QRGFPQLGNC 180
  181 IEIGLPMLLL VIGLTQYLKH VRPFKDVPIF ERFPILICVT IVWIYAVILT ASGAYRGKPS 240
  241 LTQHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [246-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRTDKANLIS TAPWFKFPYP LQWGPPTFSV GHSFAMMSAV LVSMVESTGA YIAASRLAIA  60
   61 T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [307-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPAYVLSRG IGWQGIGVLL DGLFGTGTGS TVLVENVGLL GLTRVGSRRV VQVSAGFMIV  60
   61 FSTLGKFGAV FASIPVPIYA ALHCILFGLV AAVGLSFLQF TNMNSMRNLM ITGLSLFLGI 120
  121 SIPQFFAQYW DARHYGLVHT NAGWFNAFLN TLFMSPATVG LIIAVFMDNT MEVERSKKDR 180
  181 GMPWWVKFRT FRGDNRNEEF YTLPFNLNRF FPPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle