| Protein: | PABP8_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 671 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PABP8_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
517.0 | [0..36] | [666..2] |
|
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516.0 | [0..36] | [662..2] |
|
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516.0 | [0..36] | [662..2] |
|
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515.0 | [0..36] | [666..2] |
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515.0 | [0..36] | [662..2] |
|
|
514.0 | [0..36] | [662..2] |
|
Region A: Residues: [1-216] |
1 11 21 31 41 51
| | | | | |
1 MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ 60
61 LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS RALNELNFMA LNGRAIRVMY 120
121 SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY 180
181 DTDEAAQGAI DKLNGMLLND KQVYVGPFVH KLQRDP
|
| Detection Method: |  |
| Confidence: | 52.09691 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [217-322] |
1 11 21 31 41 51
| | | | | |
1 SGEKVKFTNV YVKNLSESLS DEELNKVFGE FGVTTSCVIM RDGEGKSKGF GFVNFENSDD 60
61 AARAVDALNG KTFDDKEWFV GKAQKKSERE TELKQKFEQS LKEAAD
|
| Detection Method: | |
| Confidence: | 16.221849 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
|
Region A: Residues: [323-409] |
1 11 21 31 41 51
| | | | | |
1 KSQGSNLYVK NLDESVTDDK LREHFAPFGT ITSCKVMRDP SGVSRGSGFV AFSTPEEATR 60
61 AITEMNGKMI VTKPLYVALA QRKEDRK
|
| Detection Method: | |
| Confidence: | 4.49 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [410-520] |
1 11 21 31 41 51
| | | | | |
1 ARLQAQFSQM RPVNMPPAVG PRMQMYPPGG PPMGQQLFYG QGPPAMIPQP GFGYQQQLVP 60
61 GMRPGGSPMP NFFMPMMQQG QQQQQQQQQQ QRPGGGRRGA LPQPQQPSPM M
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.322 | a.3.1 | Cytochrome c |
| View | Download | 0.308 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.258 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.227 | a.60.7 | 5' to 3' exonuclease, C-terminal subdomain |
| View | Download | 0.215 | c.55.1 | Actin-like ATPase domain |
|
Region A: Residues: [521-671] |
1 11 21 31 41 51
| | | | | |
1 QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR 60
61 LANAAPEQQR TMLGENLYPL VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE 120
121 AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
|
| Detection Method: | |
| Confidence: | 32.522879 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
