YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25405673, gi\|...
Organism:	Arabidopsis thaliana
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25405673, gi|....

Description	E-value	Query Range	Subject Range
gi\|50756309 - gi\|50756309\|ref\|XP_415105.1\| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]	227.0	[0..1]	[158..178]
gi\|567767 - gi\|567767\|gb\|AAA53067.1\| p125 protein	222.0	[0..1]	[158..354]
gi\|5523979 - gi\|5523979\|gb\|AAD44042.1\|AF104025_1 polyprotein [Bovine viral diarrhea virus genotype 2]	219.0	[0..1]	[158..231]
gi\|114152964 - gi\|114152964\|gb\|ABI52648.1\| ubiquitin/40S ribosomal protein S27a fusion protein [Argas monolakensis]	206.0	[0..1]	[158..8]
gi\|113423966 - gi\|113423966\|ref\|XP_001132949.1\| PREDICTED: similar to Ubiquitin-63E CG11624-PA, isoform A [Homo sap...	203.0	[0..1]	[158..169]
gi\|114647760 - gi\|114647760\|ref\|XP_001136911.1\| PREDICTED: hypothetical protein [Pan troglodytes]	201.0	[0..1]	[158..79]
gi\|46100297, gi\|... - gi\|71020945\|ref\|XP_760703.1\| hypothetical protein UM04556.1 [Ustilago maydis 521], ref\|XP_402171.1\| ...	201.0	[0..1]	[158..66]
gi\|116060737 - gi\|116060737\|emb\|CAL57215.1\| polyubiquitin (ISS) [Ostreococcus tauri]	197.0	[0..1]	[158..60]
gi\|52077254, gi\|... - gi\|52077458\|dbj\|BAD46688.1\| pentameric polyubiquitin-like [Oryza sativa Japonica Group], gi\|52077254...	196.0	[0..1]	[158..8]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGKTRINLE VDSSKTVNLK IDEDPTISQN IPPDILHGKV MHLSINTVDK NTMINLEVDS  60
   61 SKTIDLNIGE NPTGGYNGPD FRH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.865	d.93.1	SH2 domain
View	Download	0.864	d.93.1	SH2 domain
View	Download	0.776	b.34.19	Description not found.
View	Download	0.734	d.12.1	Ribosomal proteins L23 and L15e
View	Download	0.723	b.34.19	Description not found.
View	Download	0.695	b.55.1	PH domain-like
View	Download	0.695	b.55.1	PH domain-like
View	Download	0.692	d.15.1	Ubiquitin-like
View	Download	0.650	b.54.1	Core binding factor beta, CBF
View	Download	0.638	b.55.1	PH domain-like
View	Download	0.559	b.55.1	PH domain-like
View	Download	0.543	b.55.1	PH domain-like
View	Download	0.452	d.37.1	CBS-domain
View	Download	0.364	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.327	d.51.1	Eukaryotic type KH-domain (KH-domain type I)

Predicted Domain #2

Region A:
Residues: [84-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVMFIFIKTL TGRRIVLEVE NCDTIENIKA KIQDKQGIPV DQQRLIFKGK QLEDGLTLAD  60
   61 YNIQNDSILH LIKRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	2ojrA
Description:	No description for 2ojrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits