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View Structure Prediction Details

Protein: gi|30696661, gi|...
Organism: Arabidopsis thaliana
Length: 682 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30696661, gi|....

Description E-value Query
Range
Subject
Range
gi|189422 - gi|189422|gb|AAA36398.1| proliferating cell nuclear protein P120
487.0 [0..6] [679..30]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALTRNKKK AATKSITPPT KQLTKSKTPP MKPQTSMLKK GAKSQNKPPL KKQKKEVVEE  60
   61 EPLEDYEVTD DSDEDDEVSD GSDEDDISPA VESEEIDESD DGENGSNQLF SDDEEENDEE 120
  121 TLGDDFLEGS GDEDEEGSLD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADSDADSDDD DIVAKSDAID RDLAMQKKDA AAELEDFIKQ DDVHDEEPEH DAFRLPTEEE  60
   61 LEEEARGPPD LPLLKTRIEE IVRALKNFKA FRPKDTTRKA CVEQLKADLG SYYGYNSFLI 120
  121 GTLVEMFPPG ELMELIEAFE KQRPTSIRTN TLKTRRRDLA DVLLNRGVNL DPLSKWSKVG 180
  181 LVIYDSQVPI GATPEYLAGY YMLQGASSFL PVMALAPREN ERIVDVAAAP GGKTTYIAAL 240
  241 MKNTGLIYAN EMKVPRLKSL TANLHRMGVT NTIVCNYDGR ELPKVLGQNT VDRVLLDAPC 300
  301 SGTGIISKDE SVKITKTMDE IKKFAHLQKQ LLLAAIDMVD ANSKTGGYIV YSTCS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 1wxwA
Description: Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.857347609112816 bayes_pls_golite062009
transferase activity 0.769739415230943 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.648175251543522 bayes_pls_golite062009
methyltransferase activity 0.646052703874729 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.00827854656426392 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [496-565]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMVTENEAVI DYALKKRDVK LVTCGLDFGR KGFTRFREHR FQPSLDKTRR FYPHVHNMDG  60
   61 FFVAKLKKMS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.045757
Match: 1ixkA
Description: Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [566-682]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVKQSSEEGD DDAVETVEQA EVSSDDDDEA EAIEETEKPS VPVRQPKERK EKKNKEKLAK  60
   61 SKEDKRGKKD KKSKSENVEE PSKPRKQKKK RREWKNEIAQ AREEKRIAMR EKAKEEK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle