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View Structure Prediction Details

Protein: SCRK4_ARATH
Organism: Arabidopsis thaliana
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCRK4_ARATH.

Description E-value Query
Range
Subject
Range
SCRK3_ARATH - Probable fructokinase-3 OS=Arabidopsis thaliana GN=At1g06020 PE=2 SV=1
288.0 [0..1] [324..1]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASNGEKSL IVSFGEMLID FVPTVSGVSL ADAPGFIKAP GGAPANVAIA ISRLGGRAAF  60
   61 VGKLGDDEFG HMLAGILKQN GVSAEGINFD TGARTALAFV TLRSDGEREF MFYRNPSADM 120
  121 LLRPDELNLD VIRSAKVFHY GSISLIVEPC RSAHLKAMEV AKEAGALLSY DPNLRLPLWP 180
  181 SKEEAQKQIL SIWDKAEVIK VSDEELMFLT GSDKVDDETA LSLWHSNLKL LLVTLGEKGC 240
  241 RYYTKSFRGS VDPFHVDAVD TTGAGDSFVG ALLCKIVDDR AVLEDEARLR EVLRLANACG 300
  301 AITTTKKGAI PALPTESEVQ SLLKGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.69897
Match: 1tyyA
Description: Crystal structure of aminoimidazole riboside kinase from Salmonella enterica
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribokinase activity 4.13972810632318 bayes_pls_golite062009
carbohydrate kinase activity 2.49008585493084 bayes_pls_golite062009
2-dehydro-3-deoxygluconokinase activity 2.46896350528821 bayes_pls_golite062009
kinase activity 1.97263499488006 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.9404172142043 bayes_pls_golite062009
catalytic activity 1.74474587246986 bayes_pls_golite062009
transferase activity 1.45532444493305 bayes_pls_golite062009
phosphofructokinase activity 1.00534507358024 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.562479151224388 bayes_pls_golite062009
binding 0.110689912513147 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle