YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: STAD3_ARATH
Organism: Arabidopsis thaliana
Length: 401 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STAD3_ARATH.

Description E-value Query
Range
Subject
Range
gi|951427 - gi|951427|gb|AAA74692.1| stearoyl-acyl-carrier protein desaturase
644.0 [0..2] [401..16]

Back

Predicted Domain #1
Region A:
Residues: [1-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMALLLTSP AMKQKPAVIT SPRRGSSPSR RLRVSCVTTN PARKKNETCN HFRPIKEVNN  60
   61 QLTHTIPQEK LEIFKSMENW AEQKLLPYLK PVEDSWQPQD FLPAPENDDE FYDRVKEIRE 120
  121 RTKEIPDDYF VVLVGDMITE EALPTYQTTL NTLDGVKDET GGSLSPWAVW IRAWTAEENR 180
  181 HGDLLNKYLY LTGRVDMRHV EKTIQYLIGS GMDSKFENNP YNGFIYTSFQ ERATFISHGN 240
  241 TARLATTYGD VTLAKICGTI AADEKRHETA YTKIVEKLFE IDPDGSVQAL ASMMKKRITM 300
  301 PAHLMHDGRD NDLFDHYAAV AQRIGVYTAA DYAGILEFLL RRWKVESLGL GLSGEGRRAQ 360
  361 EYLCTLPQRI KRLEERANDR VKLVSKPSVS FSWVFGRDVK L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 173.0
Match: 1oq4A
Description: delta 9-stearoyl-acyl carrier protein desaturase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle