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View Structure Prediction Details

Protein: GAOX1_ARATH
Organism: Arabidopsis thaliana
Length: 377 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAOX1_ARATH.

Description E-value Query
Range
Subject
Range
gi|62320340 - gi|62320340|dbj|BAD94705.1| gibberellin 20-oxidase - Arabidopsis thaliana
438.0 [0..1] [377..1]

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Predicted Domain #1
Region A:
Residues: [1-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD  60
   61 VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI SEELISDAHE YTSRFFDMPL 120
  121 SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF 180
  181 QPFGKVYQEY CEAMSSLSLK IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL 240
  241 TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS 300
  301 CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR 360
  361 ADMNTLQAFS DWLTKPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.09691
Match: 1w9yA
Description: The structure of ACC oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.921320409505 bayes_pls_golite062009
binding 0.588242505102319 bayes_pls_golite062009
nucleic acid binding 0.0678642854814351 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle