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View Structure Prediction Details

Protein: gi|17380796, gi|...
Organism: Arabidopsis thaliana
Length: 282 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17380796, gi|....

Description E-value Query
Range
Subject
Range
gi|13194678|gb|A... - unknown [Pennisetum ciliare]
gi|13194678 - gi|13194678|gb|AAK15504.1|AF325722_1 unknown [Pennisetum ciliare]
215.0 [0..152] [278..1]

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Predicted Domain #1
Region A:
Residues: [1-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALYAKLYD KYTKLQKKKY SEYDEINKEQ EEKFLTFVSA SEELMEHLRG ENQSSLEMVE  60
   61 KLRNEIISIR SGRDDKFLEC QKLLMEEELK NKSLSEEVVK LKELVQEEHP RNYEDQSGKK 120
  121 QKRKTPESAR VTTRSMIKRS RLSEDLVETD MVSPDISKHH KAKEPLLVSQ PQCCRTTYDG 180
  181 SSSSASCTFQ ALGKHLLGMK LSTNNKGKRA CIVASHPTTG LSFSLTFINN PNGEESELLY 240
  241 KPASLGTFQR VAPEWMREVI KFSTSMCPIF FERVSRVIKL NC

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.41
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle