YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|56381947, gi|...
Organism: Arabidopsis thaliana
Length: 334 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56381947, gi|....

Description E-value Query
Range
Subject
Range
gi|21618275 - gi|21618275|gb|AAM67325.1| unknown [Arabidopsis thaliana]
268.0 [0..1] [334..1]

Back

Predicted Domain #1
Region A:
Residues: [1-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATSHQSV VSFASLRSSP SSTISQCGFK IDSSLSFTSK KTNFCKIKAM ASSVSYDNTL  60
   61 LSPSKTIPDN SQKKSNEAAL ILIRHGESLW NEKNLFTGCV DVPLTEKGVE EAIEAGKRIS 120
  121 NIPVDVIFTS SLIRAQMTAM LAMIQHRRKK VPIILHDESE QAKTWSQVFS DETKNQSIPV 180
  181 IPAWQLNERM YGELQGLNKQ ETAERYGKEQ VHEWRRSYDI PPPKGESLEM CAERAVAYFQ 240
  241 DNIEPKLAAG KNVMIAAHGN SLRSIIMYLD KLTCQEVISL ELSTGIPLLY IFKEGKFMKR 300
  301 GSPVGPTEAG VYAYTKRLAQ YRQKLEDDSE VLCA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 1xq9A
Description: Structure of Phosphoglycerate Mutase from Plasmodium falciparum at 2.6 Resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoglycerate mutase activity 3.38777226675734 bayes_pls_golite062009
phosphofructokinase activity 3.23286891159765 bayes_pls_golite062009
fructose-2,6-bisphosphate 2-phosphatase activity 2.79017097989614 bayes_pls_golite062009
6-phosphofructo-2-kinase activity 2.66778782568695 bayes_pls_golite062009
acid phosphatase activity 2.30852687504184 bayes_pls_golite062009
hydrolase activity 2.03142958239384 bayes_pls_golite062009
carbohydrate kinase activity 1.86382423322759 bayes_pls_golite062009
carbohydrate phosphatase activity 1.56016941506609 bayes_pls_golite062009
binding 1.50412762608586 bayes_pls_golite062009
catalytic activity 1.37714494241232 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.05740895199147 bayes_pls_golite062009
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity 1.02570448989802 bayes_pls_golite062009
phosphatase activity 0.977262057801137 bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases 0.916759493094631 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.780670874345357 bayes_pls_golite062009
isomerase activity 0.275500708652009 bayes_pls_golite062009
protein binding 0.236742803345453 bayes_pls_golite062009
intramolecular transferase activity 0.22072573159348 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.116796724149401 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle