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View Structure Prediction Details

Protein: gi|9757760, gi|3...
Organism: Arabidopsis thaliana
Length: 487 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9757760, gi|3....

Description E-value Query
Range
Subject
Range
gi|30697388, gi|... - gi|79331627|ref|NP_001032112.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis tha...
342.0 [0..1] [487..1]
gi|113596395, gi... - gi|115469512|ref|NP_001058355.1| Os06g0677300 [Oryza sativa (japonica cultivar-group)], gi|113596395...
278.0 [0..5] [478..37]
gi|102139798 - gi|102139798|gb|ABF69983.1| zinc finger (C3HC4 type RING finger) family protein [Musa acuminata]
236.0 [0..216] [456..7]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP  60
   61 EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR GKSSLKNLLP KAGCKPKTSN 120
  121 TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [176-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGGTSVAPQT PNRKGSVHIA RSRSVPLNDK ELSLKGMDSF FRVIPSTPRV KEGDVFSNAS  60
   61 EAGNTETGDA DG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [248-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDIPEDEAVC RICLVELCEG GETLKMECSC KGELALAHKD CALKWFTIKG NKTCEVCKQE  60
   61 VKNLPVT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 2d8sA
Description: No description for 2d8sA was found.

Predicted Domain #4
Region A:
Residues: [315-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLRIQSLRNS GVPQLDVSGY RVWQEVPVLV IISMLAYFCF LEQLLVENMG TGAIAISLPF  60
   61 SCILGLLASM TASTMVMRRF VWIYASVQFA LVVLFAHIFY SVVKLQPVLS VLLSTFAGFG 120
  121 VCICGSSVMV EFVRWRRRWR ARRLEQQLNH ALTLSQPPQP LDPTTSLHHS NTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle