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View Structure Prediction Details

Protein: RS22_ARATH
Organism: Arabidopsis thaliana
Length: 284 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS22_ARATH.

Description E-value Query
Range
Subject
Range
gi|82918273, gi|... - gi|94383782|ref|XP_997963.1| PREDICTED: hypothetical protein [Mus musculus], gi|82918273|ref|XP_9071...
452.0 [0..47] [284..54]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERGGESGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG  60
   61 RLVADNKITK LEQIYLHSLP VKEYQIIDHL VG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTLKDEVMKI MPVQKQTRAG QRTRFKAFVV VGDGNGHVGL GVKCSKEVAT AIRGAIILAK  60
   61 LSVVPVRRGY WGNKIGKPHT VPCKVTGKCG SVTVRMVPAP RGSGIVAARV PKKVLQFAGI 120
  121 DDVFTSSRGS TKTLGNFVKA TFDCLQKTYG FLTPEFWKET RFSRSPYQEH TDFLSTKAVS 180
  181 ATKVITEGED QA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.69897
Match: 1s1hE
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle