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View Structure Prediction Details

Protein: gi|18406178, gi|...
Organism: Arabidopsis thaliana
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18406178, gi|....

Description E-value Query
Range
Subject
Range
gi|42571209, gi|... - gi|42571209|ref|NP_973678.1| ribonuclease P family protein [Arabidopsis thaliana], gi|30689290|ref|N...
376.0 [0..1] [296..1]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTETVVHDQ ARWAMAAMER RLAVAKAQLL QQQQQKNEKD KKGTSDVDVS MKESHQADSL  60
   61 PTPSKTSIKK VDPKDDDSVA YTKLSHPVDE NLLATNVKFS SAKGTIVDKV LHNLLRSGDS 120
  121 AQKYLQGTKS VKLDNYILLD NFVQSRSSAS GSKKASQKDS KRSKSRMSMK RLKKSGALHI 180
  181 PKDLQKFDLF KPMHGMWESY MMKLIKVTGK IQLSLTLLSA DLH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [224-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAFMFVAECK IASFTGVQGI MVRETSETFG IITRDDKFRV VPKKLSVFII QLDCWKITLH  60
   61 GDKFISRDNI VQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1v76A
Description: Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle