YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|12325402, gi|...
Organism: Arabidopsis thaliana
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12325402, gi|....

Description E-value Query
Range
Subject
Range
CCA34_ARATH - Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=1 SV=1
329.0 [0..1] [369..1]

Back

Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT  60
   61 SVNTSKRQMK KALMIPEASV LIESRSVDPQ 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEPFASDIC AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD  60
   61 TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY ITDNTFTKQE 120
  121 VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC 180
  181 VKYLPSLLSA SAVFLARFII RPKQHPWNQM LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT 240
  241 LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 2b9rA
Description: No description for 2b9rA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle