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View Structure Prediction Details

Protein: gi|30696750, gi|...
Organism: Arabidopsis thaliana
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30696750, gi|....

Description E-value Query
Range
Subject
Range
21KD_DAUCA - 21 kDa protein OS=Daucus carota PE=2 SV=1
195.0 [0..146] [310..27]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILSQTQIL HLSIAILLFI TTSSSSLSPS SSSPSLSPSP PSSSPSSAPP SSLSPSSPPP  60
   61 LSLSPSSPPP PPPSSSPLSS LSPSLSPSPP SSSPSSAPPS SLSPSSPPPL SLSPSSPPPP 120
  121 PPSSSPLSSL SPSSSSSTYS N

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.64
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [142-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTNLDYIKTS CNITLYKTIC YNSLSPYAST IRSNPQKLAV IALNLTLSSA KSASKFVKNI  60
   61 SHGGGLTRLE VVAVADCVEE IGDSVTSLQD SIRELDSINY KDSAKFEMVM SDVETWVSAA 120
  121 LTNDDTCMDG FSLVKTAVKD LVRRHVVEVA RLTSNALALI NMYASTQENF S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.30103
Match: 1x8zA
Description: Crystal structure of a pectin methylesterase inhibitor from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle