YRC Public Data Repository - Protein Structure Prediction

Protein:	ERF95_ARATH
Organism:	Arabidopsis thaliana
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF95_ARATH.

Description	E-value	Query Range	Subject Range
gi\|2980802, gi\|7... - pir\|\|T05799 transcription activator CBF1 homolog M7J2.150 - Arabidopsis thaliana, gi\|2980802\|emb\|CAA...	141.0	[0..3]	[137..40]
gi\|89275008 - gi\|89275008\|gb\|ABD65969.1\| DREB1A [Nicotiana tabacum]	140.0	[0..3]	[137..40]
gi\|5616086 - gi\|5616086\|gb\|AAD45623.1\|AF084185_1 dehydration responsive element binding protein [Brassica napus]	139.0	[0..3]	[138..40]
gi\|58585457 - gi\|58585457\|gb\|AAW79077.1\| c-repeat binding factor [Brassica juncea]	138.0	[0..3]	[137..31]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERIESYNTN EMKYRGVRKR PWGKYAAEIR DSARHGARVW LGTFNTAEDA ARAYDRAAFG  60
   61 MRGQRAILNF PHEYQMMKDG PNGSHENAVA SSSSGYRGGG GGDDGREVIE FEYLDDSLLE 120
  121 ELLDYGERSN QDNCNDANR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.30103
Match:	1gccA
Description:	GCC-box binding domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits