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View Structure Prediction Details

Protein: CHX17_ARATH
Organism: Arabidopsis thaliana
Length: 820 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CHX17_ARATH.

Predicted Domain #1
Region A:
Residues: [1-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTNGTTCPG PMKATSNGVF QGENPLEHAL PLLILQICIV LLLTRLLAFL LRPLRQPRVI  60
   61 AEIVGGILLG PSALGKSTKF INTVFPPKSL TVLDTLANLG LIFFLFLVGL ELDPKSLKRT 120
  121 GKRALSIALA GITLPFVLGI GTSFALRSSI ADGASKAPFL VFMGVALSIT AFPVLARILA 180
  181 EIKLLTTDIG KIALSAAAVN DVAAWILLAL AVALSGEGSS PLTSLWVFLS GCGFVLFCIF 240
  241 VVQPGIKLIA KRCPEGEPVN ELYVCCTLGI VLAASFVTDF IGIHALFGAF VIGVIFPKEG 300
  301 NFANALVEKV EDLVSGLFLP LYFVSSGLKT NVATIQGAQS WGLLVLVIFN ACFGKIIGTV 360
  361 LVSLYCKVPL DQSLALGFLM NTKGLVELIV LNIGKDRGVL NDQIFAIMVL MAIFTTFMTT 420
  421 PLVLAVYKPG KSLTKADYKN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 1zcdA
Description: Crystal structure of the Na+/H+ antiporter NhaA
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [441-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTVEETNRSN KPLCLMFCFQ SIMNIPTIVN LIEASRGINR KENLSVYAMH LMELSERSSA  60
   61 ILMAHKVRRN GLPFWNKDKS ENNSSSSDMV VVAFEAFRRL SRVSVRPMTA ISPMATIHED 120
  121 ICQSAERKKT AMVIL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [576-651]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFHKHVRLDR TWETTRNDYR WINKKVMEES PCSVAILVDR GLGGTTRVAS SDFSLTITVL  60
   61 FFGGNDDREA LAFAVR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [652-820]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHPGISLT VVRFIPSDEF KPENVRIEIT EDQLCSGATR LIDIEAITEL KAKIKEKESS  60
   61 RSNSDSESHI IYEEKIVKCY EEVIEVIKEY SKSNLFLVGK SPEGSVASGI NVRSDTPELG 120
  121 PIGNLLTESE SVSTVASVLV VQQYIASRPV GISKNVTTEE SLVEDSESP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle