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View Structure Prediction Details

Protein: gi|109946411, gi...
Organism: Arabidopsis thaliana
Length: 370 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109946411, gi....

Description E-value Query
Range
Subject
Range
gi|40217297, gi|... - gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche], gi...
190.0 [0..15] [357..1486]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIMKSLCF SFLILASFAT FFSVADAWRF NVGGNGAWVT NPQENYNTWA ERNRFQVNDS  60
   61 LYFKYAKGSD SVQQVMKADF DGCNVRNPIK NFENGESVVT LDRSGAFYFI SGNQDHCQKG 120
  121 Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1jerA
Description: CUCUMBER STELLACYANIN, CU2+, PH 7.0
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [122-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLIVVVLAVR NQPSAPAHSP VPSVSPTQPP KSHSPVSPVA PASAPSKSQP PRSSVSPAQP  60
   61 PKSSSPISHT PALSPSHATS HSPATPSPSP KSPSPVSH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.07
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [220-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSHSPAHTP SHSPAHTPSH SPAHAPSHSP AHAPSHSPAH APSHSPAHSP SHSPATPKSP  60
   61 SPSSSPAQSP ATPSPMTPQS PSPVSSPSPD QSAAPSDQST PLAPSPSETT PTADNITAPA 120
  121 PSPRTNSASG LAVTSVMSTL FSATFTFLMF A

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.26
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle