YRC Public Data Repository - Protein Structure Prediction

Protein:	VTE6_ARATH
Organism:	Arabidopsis thaliana
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTE6_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21592713 - gi\|21592713\|gb\|AAM64662.1\| unknown [Arabidopsis thaliana]	332.0	[0..1]	[333..1]
gi\|115439705, gi... - gi\|57899137\|dbj\|BAD86999.1\| unknown protein [Oryza sativa Japonica Group], gi\|57899112\|dbj\|BAD86931....	277.0	[0..8]	[327..18]
gi\|50728342 - gi\|50728342\|ref\|XP_416098.1\| PREDICTED: similar to transmembrane protein 19 [Gallus gallus]	269.0	[0..79]	[331..272]
gi\|57092505 - gi\|57092505\|ref\|XP_531680.1\| PREDICTED: similar to transmembrane protein 19 [Canis familiaris]	257.0	[0..79]	[331..45]
TMM19_PONAB - Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1 TMM19_PONPY - Transmembrane protein 19 - Pongo pygmaeus (Orangutan)	254.0	[0..79]	[331..46]
gi\|114645855, gi... - gi\|114645857\|ref\|XP_001158431.1\| PREDICTED: transmembrane protein 19 isoform 2 [Pan troglodytes], gi...	252.0	[0..79]	[331..46]
gi\|109097794, gi... - gi\|109097796\|ref\|XP_001117516.1\| PREDICTED: similar to transmembrane protein 19 isoform 2 [Macaca mu...	250.0	[0..79]	[331..46]
TMEM19 - transmembrane protein 19	250.0	[0..79]	[331..46]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATISSTLLL NSSRSALPLR FPKFSGFSSS SPFARSYRFG RRNLEPLSNG MLSSGSRADG  60
   61 ATAAAASMEG VMTEAMKLIQ SASPTWKSAV ANNLLIFVLG SPLLVTGLSA SGIAAAFLLG 120
  121 TLTWRAYGSA GFLLVAAYFV IGTAATKVKM TQKEAQGVAE KRKGRRGPRS VIGSSAAGCV 180
  181 CAFLSIYQVG GAAFS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [196-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLFRLGFVSS FCTKVSDTVS SEIGKAYGKT TYLATTFKIV PRGT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [240-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGAMSLEGTL AGLLASFFLA SVGCFLGQIT PPEAAVCVLA SQIANLGESI IGASFQDKEG  60
   61 FKWLNNDVVN VINISLGSIV AILMQQFILQ NWVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits