YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15233603, gi\|...
Organism:	Arabidopsis thaliana
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15233603, gi|....

Description	E-value	Query Range	Subject Range
gi\|42573049, gi\|... - pir\|\|T06005 hypothetical protein T25K17.20 - Arabidopsis thaliana, gi\|7269472\|emb\|CAB79476.1\| putat...	251.0	[0..1]	[122..1]
gi\|76160976 - gi\|76160976\|gb\|ABA40451.1\| unknown [Solanum tuberosum]	239.0	[0..1]	[122..1]
gi\|218188591 - gi\|218188591\|gb\|EEC71018.1\| hypothetical protein OsI_02711 [Oryza sativa Indica Group] gi\|115438228, gi... - gi\|50901924\|ref\|XP_463395.1\| P0025A05.24 [Oryza sativa (japonica cultivar-group)], gi\|215768142\|dbj\|...	233.0	[0..1]	[120..1]
gi\|102139975 - gi\|102139975\|gb\|ABF70110.1\| mitochondrial ATP synthase g subunit family protein [Musa balbisiana]	232.0	[0..1]	[121..1]
gi\|116060129 - gi\|116060129\|emb\|CAL56188.1\| unnamed protein product [Ostreococcus tauri]	65.0	[0..24]	[112..227]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKLIQVQS KACEASKFVA KHGTSYYRQL LEKNKQYIQE PATVEKCQEL SKQLLYTRLA  60
   61 SIPGRYETFW KEVDYAKNLW KNRSGLKVED AGIAALFGLE CFAWYCAGEI AGRGFTFTGY 120
  121 YP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.275724
Match:	PF04718.6
Description:	No description for PF04718.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.902	N/A	N/A	a.8.4	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits