YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA11_ARATH
Organism:	Arabidopsis thaliana
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA11_ARATH.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	130.0	[0..3]	[112..2]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	115.0	[0..1]	[112..1]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	110.0	[0..1]	[112..1]
RpLP1-PA, FBpp03... - The gene Ribosomal protein LP1 is referred to in FlyBase by the symbol Dmel\RpLP1 (CG4087, FBgn00025... gi\|194123351, gi... - gi\|195350097\|ref\|XP_002041578.1\| GM16740 [Drosophila sechellia], gi\|194123351\|gb\|EDW45394.1\| GM16740... gi\|194853475, gi... - gi\|194853475\|ref\|XP_001968169.1\| GG24717 [Drosophila erecta], gi\|190660036\|gb\|EDV57228.1\| GG24717 [D... gi\|195575543, gi... - gi\|195575543\|ref\|XP_002077637.1\| GD23023 [Drosophila simulans], gi\|194189646\|gb\|EDX03222.1\| GD23023 ...	110.0	[0..1]	[112..1]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	108.0	[0..1]	[112..1]
RLA1_OSCBR - 60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1 RLA1_OSCTI - 60S acidic ribosomal protein P1 OS=Oscheius tipulae GN=rpl-21 PE=3 SV=1	108.0	[0..1]	[112..1]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	106.0	[0..7]	[112..1]
gi\|4239713 - gi\|4239713\|emb\|CAA72658.1\| acidic ribosomal protein [Ceratitis capitata]	106.0	[0..1]	[112..1]
gi\|38047823, gi\|... - gi\|38047823\|gb\|AAR09814.1\| similar to Drosophila melanogaster RpP2 [Drosophila yakuba], gi\|195470260...	106.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVGELACS YAVMILEDEG IAITADKIAT LVKAAGVSIE SYWPMLFAKM AEKRNVTDLI  60
   61 MNVGAGGGGG APVAAAAPAA GGGAAAAPAA EEKKKDEPAE ESDGDLGFGL FD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.971
Match:	1jj2G
Description:	Ribosomal protein L10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits