YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GDL6_ARATH
Organism: Arabidopsis thaliana
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDL6_ARATH.

Description E-value Query
Range
Subject
Range
gi|42562378 - gi|42562378|ref|NP_174179.2| carboxylic ester hydrolase/ hydrolase, acting on ester bonds / lipase [...
402.0 [0..6] [389..1]

Back

Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLFMKLVS FFLILSTFCL TTVNSEPQCH NFKSIISFGD SIADTGNLLA LSDPTNLPKV  60
   61 AFLPYGETFF HHPTGRFSNG RLIIDFIAEF LGFPLVPPFY GSQNANFEKG VNFAVGGATA 120
  121 LERSFLEERG IH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPYTNVSLAV QLSSFKESLP NLCVSPSDCR DMIENSLILM GEIGGNDYNY AFFVGKNIEE  60
   61 IKELVPLVIE TISSAITELI GMGGKTFLVP GEF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [226-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLGCSVAYLS LYQTSNIEEY DPLTGCLKWL NKFSEYHDEQ LQAELNRLQK LYPHVNIIYA  60
   61 DYYNTLLRLA QEPAKFGFIS RPLPACCALG GPFNFTLGRK RGTQVPECCD DPSKYVSWDG 120
  121 VHMTEAAYRL MAEGILKGPY AIPPFDWSCL SSEIKNTQNS LMNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle