| Protein: | gi|133778824, gi... |
| Organism: | Arabidopsis thaliana |
| Length: | 561 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|133778824, gi....
| Description | E-value | Query Range |
Subject Range |
|
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255.0 | [0..1] | [561..1] |
|
|
246.0 | [0..2] | [559..4] |
|
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243.0 | [0..2] | [558..4] |
|
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228.0 | [0..172] | [557..1] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MDFDEYEYLE KTVENPHLEN EVGNGGGDEK VKSEGKERSR SSRHRGDKKK ERDEDEDGRR 60
61 SKRSRSHHRS RSRDRERDR
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [80-174] |
1 11 21 31 41 51
| | | | | |
1 HRSSREHRDR DREKDVDKEE RNGKDRERDR DKDRDSKGRD HEKDRSRRSR SRSERHRSQE 60
61 REKSLEIEPK ERETKDRDRD RRRHKDKKED KVEPE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [175-375] |
1 11 21 31 41 51
| | | | | |
1 ADPERDQRTV FAYQIALRAT ERDVYEFFSR AGKVRDVRII MDRISRRSRG IGYVEFYDTM 60
61 SVPMAIALSG QPLLGQPVMV KPSEAEKNLV QSTTAAAGAG GMLGPYSGGA RRLYVGNLHI 120
121 NMSEDDLRKV FESFGSVELV QVPRDETGLC KGFGFVQFAR LEDARNALNL NGQLEIAGRA 180
181 IKVSAVTDQT EVPEAGQTQT T
|
| Detection Method: | |
| Confidence: | 37.69897 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [376-464] |
1 11 21 31 41 51
| | | | | |
1 GDLDDDDGGG LSLNAQSRAL LMQKLDRSGT ASSTGLTTAA SFNGGVSTIS SLAAPALVQG 60
61 SFPAVAGLAG SGIIPGVIPA GFDPIGVPS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.656 | a.69.4 | Description not found. |
| View | Download | 0.595 | a.28.1 | ACP-like |
| View | Download | 0.494 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.450 | d.94.1 | HPr-like |
| View | Download | 0.427 | a.275.1 | Description not found. |
| View | Download | 0.401 | a.74.1 | Cyclin-like |
| View | Download | 0.393 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.390 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.356 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.318 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.287 | a.74.1 | Cyclin-like |
| View | Download | 0.267 | d.58.48 | MTH1187-like |
|
Region A: Residues: [465-561] |
1 11 21 31 41 51
| | | | | |
1 ECLLLKNMFD PSTETEDDFD EDIKEDVKEE CSKFGKLNHI FVDKNSVGFV YLRFENAQAA 60
61 IGAQRALHGR WFAGKMITAT YMTTEAYEAK FPESKVV
|
| Detection Method: | |
| Confidence: | 7.30103 |
| Match: | 1o0pA |
| Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
