YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PGPS1_ARATH
Organism: Arabidopsis thaliana
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGPS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|51970280 - gi|51970280|dbj|BAD43832.1| putative CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransfe...
215.0 [0..1] [296..1]

Back

Predicted Domain #1
Region A:
Residues: [1-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSGLASLI VDVNLRRTLR PSPTFSFPAH LSRCIITSRY SSRTSLRFPI QISRHQHRLS  60
   61 YFSSSSSSEQ SRPTSSSRNS FSGHGQLDSD DNSSPPPSQS SSKVLTLPTV LTLGRVAAVP 120
  121 LLVATFYVDS WWGTTATTSI FIAAAITDWL DGYLARKMRL GSAFGAFLDP VADKLMVAAT 180
  181 LILLCTKPIQ VAELGPLPWL LTVPSIAIIG REITMSAVRE WAASQNG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.959
Match: 1sziA
Description: Crystal Structure of the C-terminus of TIP47
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [228-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLLEAVAVNN LGKWKTATQM TALTILLASR DSNVGWLVAS GAGLLYVSAG LSVWSLAVYM  60
   61 RKIWKVLMK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle