YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PLP1_ARATH
Organism: Arabidopsis thaliana
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|2632059, gi|2... - gi|2632059|emb|CAA05628.1| patatin-like protein [Arabidopsis thaliana], pir||T52294 patatin-like pro...
439.0 [0..5] [414..1]

Back

Predicted Domain #1
Region A:
Residues: [1-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGVILAF LEKQLQELDG EEARLADYFD  60
   61 VIAGTSTGGL VTAMLTVPDE TGRPHFAAKD IVPFYLEHCP KIFPQPTGVL ALLPKLPKLL 120
  121 SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV 180
  181 SDICIGTSAA PTFFPPHYFS NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP 240
  241 DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR 300
  301 DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ 360
  361 MNIDTGVYEP VAENITNDEQ LKRYAKILSD ERKLRRLRSD TMIKDSSNES QEIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.39794
Match: 1oxwA
Description: Patatin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.15125075554295 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle