YRC Public Data Repository - Protein Structure Prediction

Protein:	TCP5_ARATH
Organism:	Arabidopsis thaliana
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCP5_ARATH.

Description	E-value	Query Range	Subject Range
gi\|33591194 - gi\|33591194\|gb\|AAQ23101.1\| cycloidea-like protein group 1A [Lupinus albus]	292.0	[0..16]	[331..46]
gi\|33591196 - gi\|33591196\|gb\|AAQ23102.1\| cycloidea-like protein group 1A [Lupinus cosentinii]	289.0	[0..16]	[331..47]
gi\|33591198 - gi\|33591198\|gb\|AAQ23103.1\| cycloidea-like protein group 1A [Lupinus digitatus]	288.0	[0..16]	[331..46]
gi\|33591200 - gi\|33591200\|gb\|AAQ23104.1\| cycloidea-like protein group 1A [Lupinus texensis]	283.0	[0..16]	[331..46]
gi\|40353191 - gi\|40353191\|gb\|AAO88039.2\| LEGCYC1A [Lupinus nanus]	266.0	[0..20]	[331..53]
gi\|33591180 - gi\|33591180\|gb\|AAQ23094.1\| cycloidea-like protein group 1A [Lupinus grayi]	265.0	[0..16]	[331..46]
gi\|33591202 - gi\|33591202\|gb\|AAQ23105.1\| cycloidea-like protein group 1A [Genista tenera]	264.0	[0..25]	[331..55]
gi\|33591186, gi\|... - gi\|33591186\|gb\|AAQ23097.1\| cycloidea-like protein group 1A [Lupinus densiflorus], gi\|33591184\|gb\|AAQ... gi\|33591186, gi\|... - gi\|33591186\|gb\|AAQ23097.1\| cycloidea-like protein group 1A [Lupinus densiflorus], gi\|33591184\|gb\|AAQ...	263.0	[0..16]	[331..48]
gi\|33591178 - gi\|33591178\|gb\|AAQ23093.1\| cycloidea-like protein group 1A [Lupinus breweri var. breweri]	263.0	[0..16]	[331..46]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT  60
   61 FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LEAAKDDVDK 120
  121 LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT 180
  181 DTTTTQRESF DLDK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [195-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKWIKNDENS NQDHQGFNTN HQQQFPLTNP YNNTSAYYNL GHLQQSLDQS GNNVTVAISN  60
   61 VAANNNNNLN LHPPSSSAGD GSQLF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [280-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGPTPPAMSS LFPTYPSFLG ASHHHHVVDG AGHLQLFSSN SNTASQQHMM PGNTSLIRPF  60
   61 HHLMSSNHDT DHHSSDNESD S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.849	d.58.4	Dimeric alpha+beta barrel

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits