YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUA2_ARATH
Organism:	Arabidopsis thaliana
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUA2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|49102208, gi\|... - gi\|67541468\|ref\|XP_664508.1\| hypothetical protein AN6904.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	140.0	[0..5]	[96..17]
gi\|119174816, gi... - gi\|90298522\|gb\|EAS28153.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119174816\|re...	138.0	[0..5]	[96..17]
gi\|85091765 - gi\|85091765\|ref\|XP_959062.1\| hypothetical protein NCU07549 [Neurospora crassa OR74A] gi\|32414711, gi\|... - gi\|32414711\|ref\|XP_327835.1\| hypothetical protein [Neurospora crassa], gi\|28920459\|gb\|EAA29826.1\| co...	138.0	[0..5]	[96..18]
gi\|159126969 - gi\|159126969\|gb\|EDP52085.1\| mitochondrial ribosomal protein L43, putative [Aspergillus fumigatus A11... gi\|66850941, gi\|... - gi\|70997101\|ref\|XP_753305.1\| mitochondrial ribosomal protein L43 [Aspergillus fumigatus Af293], gi\|6...	137.0	[0..5]	[96..17]
gi\|42553373, gi\|... - gi\|46124651\|ref\|XP_386879.1\| hypothetical protein FG06703.1 [Gibberella zeae PH-1], gi\|42553373\|gb\|E...	137.0	[0..2]	[96..5]
gi\|83772933 - gi\|83772933\|dbj\|BAE63061.1\| unnamed protein product [Aspergillus oryzae] gi\|169779459 - gi\|169779459\|ref\|XP_001824194.1\| hypothetical protein [Aspergillus oryzae RIB40]	137.0	[0..5]	[96..17]
gi\|115399496, gi... - gi\|115399496\|ref\|XP_001215337.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	136.0	[0..5]	[96..17]
gi\|38099185, gi\|... - gi\|39954264\|ref\|XP_364061.1\| hypothetical protein MGG_08906 [Magnaporthe grisea 70-15], gb\|EAA46563....	134.0	[0..5]	[95..17]
gi\|125809329, gi... - gi\|54636251\|gb\|EAL25654.1\| GA18912 [Drosophila pseudoobscura pseudoobscura], gi\|125809329\|ref\|XP_001... gi\|54636251\|gb\|E... - GA18912-PA [Drosophila pseudoobscura], GA18912 [Drosophila pseudoobscura pseudoobscura] gi\|194114017, gi... - gi\|195154623\|ref\|XP_002018221.1\| GL16881 [Drosophila persimilis], gi\|194114017\|gb\|EDW36060.1\| GL1688...	132.0	[0..5]	[97..22]
mRpL43-PA - The gene mitochondrial ribosomal protein L43 is referred to in FlyBase by the symbol Dmel\mRpL43 (CG...	131.0	[0..5]	[97..22]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM  60
   61 WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.045757
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits