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View Structure Prediction Details

Protein: KRP7_ARATH
Organism: Arabidopsis thaliana
Length: 195 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRP7_ARATH.

Description E-value Query
Range
Subject
Range
gi|14422297 - gi|14422297|emb|CAC41621.1| cyclin-dependent kinase inhibitor 7 [Arabidopsis thaliana]
178.0 [0..1] [195..1]
gi|42362358 - gi|42362358|gb|AAS13374.1| cyclin-dependent kinase inhibitor 1;1 [Glycine max]
155.0 [0..10] [195..21]
gi|23899378 - gi|23899378|emb|CAD29648.1| p27KIP1-related-protein 1 [Solanum lycopersicum]
152.0 [0..12] [194..34]
gi|12081915 - gi|12081915|dbj|BAB20860.1| cyclin dependent kinase inhibitor [Pisum sativum]
142.0 [0..22] [195..18]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETKPKRDS EYEGSNIKRM RLDDDDDVLR SPTRTLSSSS SSSLAYSVSD SGGFCSVALS  60
   61 EEEDDHLSSS ISSGCSSSET NEIATRLPFS DLEAHEISET EISTLLTNNF RKQGISSSEN 120
  121 LGETAE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.405 d.15.1 Ubiquitin-like
View Download 0.347 b.41.1 Photosynthetic reaction centre, H-chain, cytoplasmic domain
View Download 0.228 f.1.1 Colicin

Predicted Domain #2
Region A:
Residues: [127-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSATTEMRD QRKTEKKKKM EKSPTQAELD DFFSAAERYE QKRFTEKYNY DIVNDTPLEG  60
   61 RYQWVSLKP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.18
Match: 1jsuC
Description: P27(KIP1) fragment 22-106
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle