YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25518656, gi\|...
Organism:	Arabidopsis thaliana
Length:	351 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25518656, gi|....

Description	E-value	Query Range	Subject Range
gi\|115497344, gi... - gi\|115497344\|ref\|NP_001069095.1\| transcriptional regulator protein [Bos taurus], gi\|112362393\|gb\|AAI...	282.0	[0..1]	[340..1]
gi\|49333396 - gi\|49333396\|gb\|AAT64035.1\| predicted protein [Gossypium hirsutum]	276.0	[0..4]	[351..6]
gi\|208967372, gi... - gi\|208967372\|dbj\|BAG73700.1\| SAP30 binding protein [synthetic construct], gi\|167773775\|gb\|ABZ92322.1... gi\|114670502, gi... - gi\|114670504\|ref\|XP_001145625.1\| PREDICTED: transcriptional regulator protein isoform 4 [Pan troglod... SAP30BP - SAP30 binding protein	269.0	[0..1]	[335..1]
gi\|114670506 - gi\|114670506\|ref\|XP_001145390.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi\|21754486, gi\|... - gi\|21754486\|dbj\|BAC04514.1\| unnamed protein product [Homo sapiens], gi\|119609706\|gb\|EAW89300.1\| SAP3...	267.0	[0..1]	[335..1]
gi\|109118228 - gi\|109118228\|ref\|XP_001098903.1\| PREDICTED: similar to transcriptional regulator protein isoform 2 [...	265.0	[0..1]	[335..1]
S30BP_MOUSE - SAP30-binding protein OS=Mus musculus GN=Sap30bp PE=1 SV=2	264.0	[0..1]	[335..1]
gi\|34875136, gi\|... - gi\|34875136\|ref\|XP_340939.1\| PREDICTED: similar to transcriptional regulator protein [Rattus norvegi...	264.0	[0..1]	[335..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKKSEGIA LLSVYSDEDD EEMEDAEEEE EEDEKQRNQE ESEKIIEEDQ VEEANYMDEE  60
   61 EKGRGGEDSR TPRLLDGVGA SSSAHGTPRS LDNDESSRPD WSNRMIGESG VADGERGDDA 120
  121 SGESSDTLLD Q

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLPPRPRERC SEELQRKIDK FLSLKKMGKS FNSEVRNRKE YRNPDFLLHA VSYQDIDQIG  60
   61 SCFSKDVFDP SGYDPSDFCD AIEIDMKNER ERKEQESKKN QKLDFVSAGT QPGAVFAAQK 120
  121 PNIPIPGIPA LATSGL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.221849
Match:	PF07818.4
Description:	No description for PF07818.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [268-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSIPTEIAAR DGRPNKKSKW DKVDGDVKNP PLAAGTQDSI SSIRSNAALV SATSAGSGYS  60
   61 AFAQQRRREV EGRRSSERKL ERRS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits