| Protein: | PUM2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 972 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUM2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
821.0 | [0..1] | [972..1] |
|
|
600.0 | [0..1] | [960..1] |
|
|
599.0 | [0..27] | [960..21] |
|
Region A: Residues: [1-545] |
1 11 21 31 41 51
| | | | | |
1 MIPELGRRPM HRGNEDSSFG DDYEKEIGVL LGEQQRRQVE ADELERELNL YRSGSAPPTV 60
61 DGSVSAAGGL FSGGGGAPFL EFGGGNKGNG FGGDDEEFRK DPAYLSYYYA NMKLNPRLPP 120
121 PLMSREDLRV AQRLKGSSNV LGGVGDRRKV NDSQSLFSMP PGFDQRKQHE FEVEKTSASS 180
181 SEWDANGLIG LPGLGIGGKQ KSFADIFQAD MGHGHPVTKQ PSRPASRNTF DENVDSKNNL 240
241 SPSASQGIGA PSPYSYAAVL GSSLSRNGTP DPQAIARVPS PCLTPIGSGR VSSNDKRNTS 300
301 NQSPFNGGLN ESSDLVNALS GMNLSGSGGL DERGQAEQDV EKVRNYMFGL QGGHNEVNQH 360
361 GFPNKSDQAQ KATGLLRNSQ LRGAQGSTYN DGGGVATQYQ HLDSPNYCLN NYGLNPAVAS 420
421 MMANQLGTNN YSPVYENASA ASAMGFSGMD SRLHGGGYVS SGQNLSESRN LGRFSNRMMG 480
481 GGTGLQSHMA DPMYHQYADS LDLLNDPSMD VNFMGNSYMN MLELQRAYLG AQKSQYGVPY 540
541 KSGSP
|
| Detection Method: |  |
| Confidence: | 3.30103 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
|
Region A: Residues: [546-617] |
1 11 21 31 41 51
| | | | | |
1 NSHTDYGSPT FGSYPGSPLA HHLLPNSLVS PCSPMRRGEV NMRYPSATRN YAGGVMGSWH 60
61 MDASLDEGFG SS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.345 | a.5.10 | Description not found. |
| View | Download | 0.285 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.274 | a.65.1 | Annexin |
| View | Download | 0.270 | a.64.1 | Saposin |
| View | Download | 0.270 | a.64.1 | Saposin |
| View | Download | 0.262 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.217 | a.39.1 | EF-hand |
|
Region A: Residues: [618-972] |
1 11 21 31 41 51
| | | | | |
1 MLEEFKSNKT RGFELAEIAG HVVEFSSDQY GSRFIQQKLE TATSDEKNMV YEEIMPHALA 60
61 LMTDVFGNYV IQKFFEHGLP PQRRELADKL FDNVLPLSLQ MYGCRVIQKA IEVVDLDQKI 120
121 KMVKELDGHV MRCVRDQNGN HVVQKCIECV PEENIEFIIS TFFGNVVTLS THPYGCRVIQ 180
181 RVLEHCHDPD TQSKVMDEIM STISMLAQDQ YGNYVIQHVL EHGKPDERTV IIKELAGKIV 240
241 QMSQQKFASN VVEKCLTFGG PEEREFLVNE MLGTTDENEP LQAMMKDQFA NYVVQKVLET 300
301 CDDQQRELIL GRIKVHLNAL KKYTYGKHIV ARVEKLVAAG ERRMALQSLT QPQMA
|
| Detection Method: | |
| Confidence: | 147.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
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