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View Structure Prediction Details

Protein: PME47_ARATH
Organism: Arabidopsis thaliana
Length: 624 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PME47_ARATH.

Description E-value Query
Range
Subject
Range
gi|92895238 - gi|92895238|gb|ABE92634.1| Pectinesterase [Medicago truncatula]
657.0 [0..85] [620..69]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTHSSSLVF LALLCLSWAL LVSPTRPPSQ PPSHPPIQPS SQPPTQPPSQ PPTQPPTQPP  60
   61 SHPPTQPPTP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.09691
Match: 1oqyA
Description: Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [71-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPSQSPSQPS PLPPNIACKS TPYPKLCRTI LSAVKSSPSD PYHYGKFTMK QCLKQARRLS  60
   61 KVINRFAQRV EADPGTSTVE EVSAVADCGE LAELSVEYLE TVTEELKAAE LMTAALVDRV 120
  121 TSLLGGVVTN QQTCLDGLVD AKSGFATAIG TPLGNLTRLY SVSLGLVSHA LN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 1xg2B
Description: Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [243-624]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNLKRYKGSK GKIFGGGNKP VREPLETLIK VLRKTCDKGK DCRKANRNLG ELGETSGGSI  60
   61 LVREAVTVGP YETDNFPTIT EAVAAAPNHT FPEQGYFVIY ARAGLYEEYV VISNKKRNIM 120
  121 LIGDGINKTI ISGNHSFIDG WTTYNSSTFA VVGDRFVAVD VTFRNTAGPE KHQAVAVRNN 180
  181 ADGSTFYRCS FEGYQDTLYV HSLRQFYREC DIYGTIDFIF GNAAAIFQNC NIYARKPMAN 240
  241 QKNAVTAHGR TDPNQKTGIS IINCTIGAAP DLAADPKSTM TFLGRPWKPY SRTVYIQSYI 300
  301 SDVVQPVGWL EWNGTTGLDT ISYGEYDNFG PGADTSKRVQ WSGYSLLNLV QAMNFTVYNF 360
  361 TLGDTWLPQT DIPFYGGLLH TE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 134.0
Match: 1gq8A
Description: Pectin methylesterase PemA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle