YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|5923663, gi|6...
Organism: Arabidopsis thaliana
Length: 154 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5923663, gi|6....

Description E-value Query
Range
Subject
Range
gi|186684006, gi... - gi|23125131|ref|ZP_00107078.1| COG0681: Signal peptidase I [Nostoc punctiforme PCC 73102], gi|186684...
173.0 [0..2] [152..16]

Back

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIQNILWQV AKKSFTGSII GLTISDRCCS VVPVRGDSMS PTFNPQRNSY LDDYVLVDKF  60
   61 CLKDYKFARG DVVVFSSPTH FGDRYIKRIV GM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.30103
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [93-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGEWISSSRD VIRVPEGHCW VEGDNKTSSL DSRSFGPIPL GLIQGRVTRV MWPPQRISKI  60
   61 GR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.58
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle