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View Structure Prediction Details

Protein: PDI53_ARATH
Organism: Arabidopsis thaliana
Length: 483 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDI53_ARATH.

Description E-value Query
Range
Subject
Range
gi|42562656 - gi|42562656|ref|NP_175508.2| thioredoxin-related [Arabidopsis thaliana]
324.0 [0..1] [483..1]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSTKLKSV DFYRKIPRDL TEASLSGAGL SIVAALFMMF LFGMELSSYL EVNTTTAVIV  60
   61 DKSSDGDFLR IDFNISFPAL SCEFASVDVS DVLGTNRLNI TKTVRKFPID PHLRSTGAEF 120
  121 HSGLALHNI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [130-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHGEETKEEF PDGAIPLTSA SFEALSHHFP ILVVNFNAPW CYWSNRLKPS WEKAANIIKQ  60
   61 RYDPEADGRV LLGNVDCTEE PALCKRNHIQ GYPSIRIFRK GSDLREDHGH HEHESYYGDR 120
  121 DTDSIVKMVE GLVAPIHPET HKVALDGKSN DTVKHLKKGP VTGGCRVEGY VRVKKVPGNL 180
  181 VISAHSGAHS FDSSQMNMSH VVSHFSFGRM ISPRLLTDMK RLLPYLGLSH DRLDGKAFIN 240
  241 QHEFGANVTI EHYLQTVKTE VITRRSGQEH SLIEEYEYTA HSSVAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [416-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYYLPVAKFH FELSPMQILI TENPKSFSHF ITNLCAIIGG VFTVAGILDS IFHNTVRLVK  60
   61 KVELGKNI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle